Scaffold Ga0222717_10029009

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10029009
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3667
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F001217	Metagenome / Metatranscriptome	745	Y
F067108	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1002900912	F000352	N/A	MRTIKLTESDCTFVHYVLRMYANQTEGLDRQDKHEIYEVANKFK
Ga0222717_100290092	F001217	N/A	MSATKFNGFEKYFIQTALKSAIEQAEVDVLAAESNGKRSIYAPGYFTMVGNEIIDKVNSMTLKKFQD
Ga0222717_100290093	F067108	N/A	MSKIKKVDEVVDFSVFTKFTKDLGLFQVNASVWSMVSQDCTNSHDISEIELDFSIDNKRCKYNGFKEIYEKLYGINTFNQFTAELMAEFEKAYFKQTTYKTK