Scaffold Ga0222717_10028241

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10028241
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3721
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042021	Metagenome	159	Y
F043087	Metagenome	157	N
F101910	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100282412	F101910	N/A	MLFLLEKKEKKLLTDYQICEIDIEKSSTAKYLEQNYSCEWGFNQDTNLDPFFHLRACIVNPVKIASGKTIPIPTGIYPALKNPNFRIEINSFTDLVYEQGLALADGISTFEFTFRNEIWLLIKNNSEQAQLIQPTQKIATFSVNYRPRMVLNYVDQIEDIAWKNSSAKSYIQKIKKKISPDIHDVKKEKHPDMDYSRGTIQQYIDGGFATHQLDINEVEGIIRPLQKQETLKEPIGVKSSES
Ga0222717_100282414	F043087	AGGA	MSIGFLTQYYRGLGHSQRIKFIAEKTAERHDVVIMDQLFQPPLDYKVPHIAFLGDYKIPDINKVFQFIQQAPIINFRINQFIKTIEKYKVKVLVCEGFPFCRQQFAHEYFRYLAECKKRNIKIIISVRDFPWDEPHHNQLQDWVLYTQNIVCKHYADKILVHGDKELLPLISDRTRLANSIQIIKDIDSLIQYTGYVCDESQPIHKQKNNNIYVSTGLNKDESVVIFKRIAEIAQHYPEHKFIMPIANKYNSMGGRKNKNIYLVEYVPELRNKLTECAAYITYGGYNATVEILKSQVPSLIIPRQSGRKMEQFVRAFTFEPYDFFKVLTMQEFGGIKSVLDKLISGYSPKPFTYNLQGTSNTADILSEIYNEL
Ga0222717_100282415	F042021	GGAG	MNFEEIDKQESMWRDLVSRGEILSLQLLAQEAKKDLEKRIASFLLVRKKTIELGYNSFEFRNKTYSTDTETRDKAMYSWSNAKNVSKRRALLAYRKAETNAWIYKTLLDKKKTGLFKKCKNLILIGSGMYPYSMFDIQKKYKHIQQIGLEIDEKRAAIGYDLVTKSPAKDHIKIVTCDGYEYDYSYMLEDDLVFISCDVDNKKLMNKVMETCKAHIFICAPYEKTWLRSLLTSTKISKKDGVT