Scaffold Ga0222717_10027440

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10027440
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3776
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005613	Metagenome / Metatranscriptome	395	Y
F030897	Metagenome / Metatranscriptome	184	N
F044500	Metagenome	154	N
F100722	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100274402	F030897	N/A	MQVEAGVLHLEHNGIEVEASIVWDLVQGGPIYAMKDGKIFMSLTTEELKALYVLYRDIELKGTVEDA
Ga0222717_100274406	F100722	GAG	MDNSTQVILAVVTLLGSAGIWRYAEARLKVKAEQKKEEQSASDTVLYRDDLKSRVEEMDAALKEANKELLALTEKVAKLETENSFLRREIDILKRN
Ga0222717_100274407	F044500	GAG	MEQLKVKAQEIKARLKARFNALRDIWQYSDSQPTEITLAAALVILYPIATFLELGYSPIMQLLAPIAGLYQLYCVSGKCLSCRVKASWVTFSFYLLAAVMYLYCGLLFKGPSYWGWILLSVSSFGSLKRIKKEELHRKNG
Ga0222717_100274408	F005613	N/A	MKKTRKYEFTNEAAADKAIAALPHDSEGNPTHGHNVVKLGYLTIEPAEYNEEGEETKAAVLSDVYAVDVWWSGEALESWKPYIVWPTPLGIHNFGSSSSRDEYAGTYCDLFPDSLYCNPPEPEEL