Scaffold Ga0222717_10027013

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10027013
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3809
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026437	Metagenome / Metatranscriptome	198	Y
F048641	Metagenome / Metatranscriptome	148	Y
F095173	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100270132	F026437	GGAG	MKYYIGNIDEQYGEFEVEQSFLFATAGDANSLMEQLAKEWYGAEESELDSEGLREGMYWNHFEMAYGAGSHYEVTKATYNELKEKRVFTEIYADEEVKYDRTPKTFQEMGG
Ga0222717_100270133	F048641	AGGAG	MIDVKRKIHIDLVALYDLAYQNDMPEICGALSNVEHMVWEMRRREDKEGKKA
Ga0222717_100270136	F095173	GGA	MENLNFDNDAIIDPKDEAIENLRQQLAEANRRDAFKAEQLDQLGDAIMAVIGDKVEALAEAKADDAVDGAFRDFNNDFNIYDHQSEIEDMISDRLPPVQDEDENREAVESIVREVLAGATVTIDV