Scaffold Ga0222717_10021569

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10021569
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4320
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F035970	Metagenome / Metatranscriptome	171	Y
F055213	Metagenome	139	Y
F081232	Metagenome	114	Y
F090864	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1002156910	F055213	AGGAG	MTSTQRYGQPQVGDLFVSEIQGRLHILVSYEFVYKDRVDFYKYYDVKLKRLDDGASQRWKVPQHEFYRKYKPLVPDPQA
Ga0222717_1002156913	F081232	GGAG	MIQIGTLVRLKFKSVRYSQYKLVSEKIERDEDKPVGIVVKHGYKGMNGPLVVKWINGNAEIGHPTGSIGYFGKYKVEIIA
Ga0222717_100215692	F035970	GAGG	MNNKWNIIMKTAKELATEYRKEGWTGDCNDFTQASSSVSQELTNREMETLWDEFSDQELLTDGMIFTFTRQGRDKIISVKNCPPK
Ga0222717_100215693	F090864	GAG	MTHLVSHNKSGTGYALQETDGRWVVRFHHNYDKYFVFTKNAFKHGYLKDCGIVNLEDNNE
Ga0222717_100215694	F025385	AGGAG	MSFKTNDNTVIETFMQQKSAKSGKMRTDGQSLWSFDTRIAEHISDGQGQGATIVYDYTYGGGHYISPTTSNHVRLTKKHVPRPNWMSVNEAQEHGLCPLVESRHDTSRQS