Scaffold Ga0222717_10021561

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10021561
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4321
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078747	Metagenome / Metatranscriptome	116	Y
F090510	Metagenome / Metatranscriptome	108	N
F097491	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1002156113	F090510	AGGAG	MKLKNPIAKELRTPKFKSKVIENKKKKLEDDDKHWITSGYEGTEILVKNSDIHNLLDDDVDEGLFGENDESLVARYKKETGGNVDG
Ga0222717_1002156116	F078747	AGGAGG	MSNNIKPEVTISWGTEKEITKTYIFEDETQKAFFLKGVDESNGWLEYEIVEKGETISYVQSNNPVSRIIP
Ga0222717_100215617	F097491	GGAGG	MSFEDGIKMWREDIGQFYDDHFSEEEMEILYEIVRGNVDVDTLKEKLVDFFEDSDIPSLPFFDLKTDEGILDRLDYDFGYVGGTGKRAGYRTH