Scaffold Ga0222717_10019709

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10019709
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4535
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F014804	Metagenome	260	Y
F018080	Metagenome	237	Y
F024889	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1001970912	F024889	N/A	MNSVTIGALMIVGVVILYIFALSYVEGKITRQENEKLENNIDKLDDKA
Ga0222717_100197092	F014804	GAG	MSDDWIDNILDGEPSGITDTQWLIIESNIDQTSLTTRMKSDILGRINDLTELEAEEIITKIYENRYEKDTRKQWEKMCKDGVFGHRDF
Ga0222717_100197093	F018080	N/A	MEYLDIEIFNHFLKAYTYIIWNKKHLLGEIVEDDILKLLDEVQLIDFYHFDKTKFKVEKSKVEKYINRNDK
Ga0222717_100197097	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGNQEHSISQLGIFAELIARHLMENNNGIKYKAALLLEERPIVEADLIMQGIGETHYIDVKGVRSGGDTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN