Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10017042 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10017042 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4916
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4916

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F006307	Metagenome / Metatranscriptome	376	Y
F031527	Metagenome / Metatranscriptome	182	Y
F033629	Metagenome	177	Y
F051178	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100170421	F033629	N/A	EKKRIIFHLVFTXLLDKYXYKGIMAIEQLDKKGTAYLQGIQGLNYLGKMSGYKKPMNILKSYLKSDGKRKTLYLKFNDGELDEVLNGVYQIKINPSDKNFLNDLRDELEDNGEDIDKSKTKPGQTITFKSGFQLYLSGRTLSNVIDESGNSVAAKKPTNDQQEDGFIINLKEGKMLEPLKIDNAIGFQFGKDWHSSFIKSFDAFTSKIIAKKDLSQYEFYRDSDPKKLKMLNQITDPDILPSSKDNWNPSDVWAVKISEKKDLESKIEKLYDERKKNKNVSIERVNKFIETQFKNKNLIGISLKQVLGTTAKVDKITKDAKYINSVKFLGFKKKMDYDVLKTYFDIDVKMSCIKNDTLDYLFRFRPRGSSSALTNNGEGRLLGSGPADGAIDKKNVLSVLLPNADNITKEKIGKSKTILEALDFLVKSKKYKGLQTWVNKGNYKFLKIKNLDKKADDKDIRRGLLNLNYAYLIDTYKDQKELYKKFYLAAKKVNEFSSIHFKISG
Ga0222717_1001704212	F006307	GAG	MKKYCQNCGHDCHCGGDCMKNYDGTSEIKCCGHCRHENKGEKEKNNE
Ga0222717_100170426	F051178	GAGG	MKKGKCTVCKKVFTVKKGESLIGKLGIIPVDLCKTHLKKVLSYDEINLNDTRANG
Ga0222717_100170428	F031527	AGGAG	MKKQKNKIKKVYEYMTVFFAILGTLAMVSAVGAVEEDQWLLGASAVCVGIASFIMTLFSQQLYSEAK
Ga0222717_100170429	F003514	GGAGG	MNLSTKAMSDIEKYNKLREQELILKAAKSGGAIESEILHGSLFVTFKSGSTMGYMLSKNLKYVLEKLLDNTTVKVYNTTNNEYAYDFI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10017042

Overview

Ecosystem & Geography

Associated Families

Sequences