Scaffold Ga0222717_10015480

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222717_10015480

Scaffold Ga0222717_10015480

Overview

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10015480 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5194
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)		Depth (m)	38
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037812	Metagenome / Metatranscriptome	167	Y
F047686	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100154803	F037812	N/A	MKHMIKWLKISAGINLYLSVILTLVLIALVTDIVLDTYWHSNAYLEQLGIGSPNS
Ga0222717_100154807	F047686	AGAAG	VNKLLLIITLTFPLFLTAEEIVISPAYLPEGRVLDLTYNPPLDPYFCDNNPEICKKIETSNIPIFDMAPRATNGQWLAFWTFQLLDVYSTSRALKYDCVKEINPLFTENPNDARLVLTKSFLLLPGLLYNDYWTEVTPEELDGTNMFYATVVGNNFRLLNQAKRECNKIN

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