NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10014352

Scaffold Ga0222717_10014352


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10014352 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5411
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015734Metagenome / Metatranscriptome252Y
F019756Metagenome / Metatranscriptome228Y
F050011Metagenome146N
F074154Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100143523F050011N/AMTSSLENFSEYIKPYLLETIAIKTDKKIIRKGKLKIFQVKQHYARLTLEDGERTRIYEVPYPYDISKEGNVTTLNYRTKMFLNIQDLDLQVKLLDSTKKSKLYDELVYILPLRDVD
Ga0222717_100143524F015734N/AVIIQRSALDSILLNNVCDVRFVRRDPRPGDGPTRRMLCTKSYDLLNSVNGRTTLNYRPPKGPKKINEAADNLLVVWDILMQNYRTINCNQVDLIKEIPASEFWPYFNENIYPMSADQKAGYINS
Ga0222717_100143525F019756N/AMPAHESIDRLPSQKHLIDLSTHSEGDIGLTDDFELNFIFDDILLVEYVDENDEGEIQRNGIFVPTNAVTKAWRKARVILTGPKAEYVKVGDVVIFPNNLGVSISNLDINGKKLKKGIFLNEDRLFGICTLKE
Ga0222717_100143526F074154N/AMNFFQLQNKLFFSDKRKQPDYIDSEGEQAFVPFLLNRWLSMYSKDTVSFTNNILNKYCSIFDDKQRMFRFYYNIIPRLQFKRISYIKKKKKEKTEEVEHLELIAKNKHISVRELKSYMEM
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