Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10013993 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10013993 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5490
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (66.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

5490

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (66.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005611	Metagenome	395	Y
F006282	Metagenome / Metatranscriptome	377	Y
F008684	Metagenome	329	Y
F019923	Metagenome	227	N
F024922	Metagenome	204	Y
F025409	Metagenome	202	N
F068594	Metagenome	124	Y
F073762	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1001399312	F073762	N/A	MTKITLNKLVKIINKENEPPESWTPEAKEGAKYFTNLGHSLNDLDDGGDMAEEFNRIMNLDSDLYK
Ga0222717_1001399314	F019923	GAGG	MSVDFEALDHVRAENKARVHEERKQMRVELAEYINKCDSYELSRLYDEYKRLRKK
Ga0222717_1001399315	F024922	N/A	MNCQGYMMSTNDLEKNRLLNKKDFDCFFDGHNEYDFKKMSINKLRSTYGVTHLINGKYKDMRGNCFKCLTPLRADYTRHENYCLDC
Ga0222717_100139935	F008684	AGGAG	MTDKNFELACELADDLYFKFIDSLHDDIANEYVVADKDNIGSTKNTDKGSDLYWEIENTIKQTLDKQGG
Ga0222717_100139936	F005611	GAGG	MKKYKVRAEETIYAIYETEIEAKDKKQAEKIALDTCASDYLSSDWSNSAGDFTIEDIEEI
Ga0222717_100139937	F068594	GAGG	MKEYTFWQEVKKYVREECTIKANSLDEALEIHNDGGADYKEVHCFDEEITDEGTDEKI
Ga0222717_100139938	F006282	AGAAGG	MTENETLKNRIAELSKQNTLLADHLASMCCQADEDTPSEYRTKHFRSTMDDAYEYLEKIGYFKRGK
Ga0222717_100139939	F025409	N/A	MNMKKVKTEKYQGYTIEVYEQEPNVEYPLNDNDWDNLDPDCLGTHAYRVFDKDNELIYEDKTHMWDIGACLENAKLDLDMDIKEQASEQKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10013993

Overview

Ecosystem & Geography

Associated Families

Sequences