Scaffold Ga0222717_10013617

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10013617
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5583
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F019252	Metagenome / Metatranscriptome	231	Y
F059967	Metagenome / Metatranscriptome	133	Y
F087890	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1001361712	F001802	N/A	MQTMKHLKKDYIQLGNLIYRPYKVCDLPQNFGCIEFNEKEGISEWFNYKGYTYIFETTTK
Ga0222717_100136175	F019252	AGCAG	MKLIDQVKPEVLDALAESKCEFSSSYRRIILSLESVNRYKQLTIDEIQTLICFLPDEFKPQGDIDMFYGDNILQEKYKL
Ga0222717_100136176	F059967	N/A	MTKEELEQKIQMLEQKVVSNTSEMVSVQADLKIAQKQLEDINKPEITPLQFDLIQEAIERGVDEFNFDDDANYDKEFGINYDGKVHLESLDLTCTYELVEMITEKVHKLFTEAECPEEDDNSELNTQTVAEKVI
Ga0222717_100136178	F087890	N/A	MKKFLKDKSGPIMMGIGAILLVSDLMGVEGIITFAVGIILMVEGVDRM