Scaffold Ga0222717_10011826

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10011826
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6037
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003637	Metagenome / Metatranscriptome	476	Y
F020921	Metagenome / Metatranscriptome	221	Y
F072428	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1001182612	F020921	GAG	MATPTVPTTNVGMYNHLRESTDCNETTNLSLASLCDGATHGSITNTFGAAGGPAKDFDVIGGTNNPITTTPNSVNLYDDIIGIAPFNLANTIGGRYT
Ga0222717_1001182613	F003637	AGGAG	MAKVIAEKTQEAIVADAPKMVEIKHTRSMQDASGNDVEVVDWTETKSVDEAISQCEAHKANLQSQLTECEAELADYIAIRDAE
Ga0222717_100118267	F072428	AGG	MDLAESIKKLKELSVILQTKTISDREKEFYTPELFKVIDKLEIPQLIGELDNEYVS