NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10011826

Scaffold Ga0222717_10011826


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10011826 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6037
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003637Metagenome / Metatranscriptome476Y
F020921Metagenome / Metatranscriptome221Y
F072428Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001182612F020921GAGMATPTVPTTNVGMYNHLRESTDCNETTNLSLASLCDGATHGSITNTFGAAGGPAKDFDVIGGTNNPITTTPNSVNLYDDIIGIAPFNLANTIGGRYT
Ga0222717_1001182613F003637AGGAGMAKVIAEKTQEAIVADAPKMVEIKHTRSMQDASGNDVEVVDWTETKSVDEAISQCEAHKANLQSQLTECEAELADYIAIRDAE
Ga0222717_100118267F072428AGGMDLAESIKKLKELSVILQTKTISDREKEFYTPELFKVIDKLEIPQLIGELDNEYVS

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