Scaffold Ga0222717_10011219

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10011219
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6206
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024563	Metagenome / Metatranscriptome	205	N
F048332	Metagenome / Metatranscriptome	148	N
F063454	Metagenome / Metatranscriptome	129	Y
F077338	Metagenome / Metatranscriptome	117	Y
F086331	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1001121910	F048332	AGGGGG	MEIIKSIKLRQLRKERDLIQANKKVWINLHAKDNLDASLSRTFLAYQRAINNINTAIRRLKND
Ga0222717_1001121912	F024563	AGGA	MKIEYTTKKDLIKQIESKGVSPLSMNATIEDFKKYLKAHNIEAKRKEVSKNVA
Ga0222717_1001121914	F063454	AGGAG	LKQLELNLKIKGTSSFDDVPTLKQLIERKRKRPKHLDHLSDKTYKELQYIYRGKL
Ga0222717_100112197	F077338	N/A	MEKKILQVVNLSPSESWVEKLTDIHPMKQIFWASIIQVSVFFGMLGMFQVNSWIFSH
Ga0222717_100112199	F086331	N/A	MKINKMSKDDLIKNIEKAENLLNNKRWIKQQTKFWIGVYINHLAKLRTELKNRG