NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10008769

Scaffold Ga0222717_10008769


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10008769 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7125
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F030067Metagenome / Metatranscriptome186N
F030293Metagenome / Metatranscriptome186N
F073499Metagenome / Metatranscriptome120Y
F105072Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100087691F105072AGGAGGMENVTNRTVFGRSIIIRKRKVLKRPFSYSQGECFHKLSGGLWSLYIEHKQSRGMGVSIDD
Ga0222717_1000876910F002858AGGAGMAIDEKSIYVVDGGDYSIYCLGYTQARAVTNDIMRLDPWGGIPFVLRKDLELSLDDRGNVVMSKSTLDKILILASDELPEVDQ
Ga0222717_1000876912F001655GAGGMKQPENSHTKHFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYYKEELGMFEHFEASVHRTAKALKESYTYWPEGYVHIQTLINDEYVNMI
Ga0222717_1000876913F073499N/AMMTDEELEQWLRDNPWKAYVVYPFGGILGALFVQYSCIQIIDSFLTGKIT
Ga0222717_100087695F030293GAGGMKIEVLNDKVSIEALGLIPHFFERSLYIKDQPIQSVADKMDDLYYYGGFRHPFEGTVAEDGQYVADNDEDDPLDPIARIDKLGYTLWVYPYAIVGLTDNKGNQKIARFD
Ga0222717_100087696F030067AGGAGMMPRESWEIAHDEYYDALEAPEEVDRCDIEAWKEEEQKIIDELCRRMEKAYNGVL

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