Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10008769 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10008769 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7125
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7125

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F030067	Metagenome / Metatranscriptome	186	N
F030293	Metagenome / Metatranscriptome	186	N
F073499	Metagenome / Metatranscriptome	120	Y
F105072	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100087691	F105072	AGGAGG	MENVTNRTVFGRSIIIRKRKVLKRPFSYSQGECFHKLSGGLWSLYIEHKQSRGMGVSIDD
Ga0222717_1000876910	F002858	AGGAG	MAIDEKSIYVVDGGDYSIYCLGYTQARAVTNDIMRLDPWGGIPFVLRKDLELSLDDRGNVVMSKSTLDKILILASDELPEVDQ
Ga0222717_1000876912	F001655	GAGG	MKQPENSHTKHFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYYKEELGMFEHFEASVHRTAKALKESYTYWPEGYVHIQTLINDEYVNMI
Ga0222717_1000876913	F073499	N/A	MMTDEELEQWLRDNPWKAYVVYPFGGILGALFVQYSCIQIIDSFLTGKIT
Ga0222717_100087695	F030293	GAGG	MKIEVLNDKVSIEALGLIPHFFERSLYIKDQPIQSVADKMDDLYYYGGFRHPFEGTVAEDGQYVADNDEDDPLDPIARIDKLGYTLWVYPYAIVGLTDNKGNQKIARFD
Ga0222717_100087696	F030067	AGGAG	MMPRESWEIAHDEYYDALEAPEEVDRCDIEAWKEEEQKIIDELCRRMEKAYNGVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10008769

Overview

Ecosystem & Geography

Associated Families

Sequences