Scaffold Ga0222717_10007206

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10007206
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7910
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F007006	Metagenome / Metatranscriptome	360	Y
F024584	Metagenome	205	N
F039351	Metagenome	164	N
F050674	Metagenome	145	N
F060351	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000720610	F024584	GAGG	MYFKLVSKNAYRDLIRNARRICISQLSEEEKSAAFIELYGILKDKLFESTRSLNVEAAYADRCIHWNQRDIDQIKPVTTTRNPWLRFKREFEQCLDGKMPSKNVEQSLAWFYATPYRDDWIAS
Ga0222717_1000720611	F060351	N/A	MTTKYNDMVWKILCGMPIEVFDEDDDTVWENETWELVKTRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTKSEDITQLSHDIFNNILEKFTEDKLIRKRPENIRKTFQLV
Ga0222717_1000720612	F007006	AGGA	MEVALKAELRKEISRIVDLMIQGEAIRESINELKKDIKAEYDIPVATITKISTIVRKENLQEEEEKWEEIKDIVAACL
Ga0222717_1000720613	F039351	AGCAG	MARIMVTGDSWSAGEWDPTLTPEETRAFAEKYSMSRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEVGFDFVVYVKTCATRDFKHLTPEHHRAYTTTDLFEKINLVKELEYNVLDQYKHKLILLGGIEKIEPDFNCYLKIPSITEFFYPDFEDTTIFGDYTHFEKYSDNDKRGAMKLWELWEYKHNFWKDHPEYFASATDQVHPNRKATKALAEFIHNHIS
Ga0222717_1000720614	F005315	N/A	MFIITCGDSYTQGEGLEKQTQAYPYLLNADIKNLAQSGASEYLITTQIEQAVKLKPNLIIVGHTSEYRWEVWDPRNKCQQGFIVANHIMRNEKYYRNWILSEQILGNTRNIKEHKAAWHAAGMLYFSEQQLVQRLWSGAVAKQIILAQRANIPMIHHCCFPHLQALLEELTDDYIDFHLDLEKHKDMAPDNSHAGAKSHKKLANMIMNKLS
Ga0222717_100072069	F050674	AGGA	MDRIVSPLNAVGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHEEYDSAVRRINAHWRMLPRFRHHNPDEFWKRDKVSYPPMYLELMVDDSDW