Scaffold Ga0222717_10006545

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10006545
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8328
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010503	Metagenome	303	Y
F018270	Metagenome	236	Y
F042027	Metagenome	159	N
F089424	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000654515	F089424	AGGAG	MFALIATAPLNDGTNGFRFNILGRKGLYRPRKLKSRGIGIEKLSCTTAFHLFKRTIYLEKKVNRTTSRRLRHFAG
Ga0222717_1000654518	F010503	AGGAG	MGTKMDHDKLYKIQTYSFHDAIITVTEAFYGRTEIDKPTKPNKHGHTQSPTVHADGSEHYYKYTHWEEAIAVVPLHFDYADNLTDADKVKTVLETIDALEKAYASYPDGEISISWTMRRNCINQD
Ga0222717_100065455	F018270	GGGGG	VRPDYTIQSDWSKWEDHAKTCDVRALRHIIADCRNAAAAMRSHNTDKEGYYIDQACTYSDELRNRLT
Ga0222717_100065459	F042027	GGAG	MFDTWDQALHMRDKLSEVSVLAMQLSSLSADIVDDFDNHKRCATTEERLREKLKELNTTLEGLNI