Scaffold Ga0222717_10005524

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10005524
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9138
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (43.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010615	Metagenome / Metatranscriptome	301	Y
F024505	Metagenome / Metatranscriptome	205	Y
F030699	Metagenome / Metatranscriptome	184	N
F085166	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000552411	F085166	N/A	MDTEKTETETLRRSSDDLLHFIAEEKLRFIWVGAMIPESNQSTLGQDTLIIIDQENIELYAGRYFAESEQRIDILREGVEFIMDQEEL
Ga0222717_1000552415	F024505	N/A	MTEYEILTRHDDMPEGYVGRTYKWAHDEKEAVRLLLKKMPDKTGVCVFKRGGTGTILSTKALS
Ga0222717_1000552417	F030699	N/A	MTDNLNEPPLAEIIMDVRENFIYLRSENLRLQEENNQLKQAIAALNSEPTNSL
Ga0222717_100055249	F010615	N/A	MQTIQLEGIELRPNKYFDITVEAEAVTTHCESSSAAGESQVTEAWEERDIDGFEIVSLVYWPNEDTPVDLPTIVLTHDDRATIYEETLRYI