Scaffold Ga0222717_10005337

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10005337
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9324
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F019751	Metagenome / Metatranscriptome	228	N
F065664	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000533712	F065664	N/A	MAGVAEIMCQYGAGDKVLQLEQFDTMGFYEYYGVTETFKDLQSLVKRAEDIQTSYDKIVIHDYSEFKLNFPKNKVVLVFHGSKLRSMDQTEVEAVKEYPCFVTTSDLLDKLPFATHLPAPCDRELFKTDVEGYGWIAINRSYQRDIVEKRIREKYPDIQYYERNPGNIIRYEDMPDFLSQYKHYVDWKFTNDAEPVSLPDPSCTGIQALALGLTVHDKDGGTLSPHLLLIHDAKRVCERFIDEIT
Ga0222717_1000533713	F011190	GAGG	MKLLEGFINGLKKSFSGKDYLREINTCKKCGKPCFFDSCLKCETDEAYRGWERTGKL
Ga0222717_1000533714	F019751	N/A	MTRTRGPDLSKEFHDYIFNQWMFFSENAYGIANKINKDTELMSKFGKTSPAGVHYHIKQIEKDLENSISEDAMDTYIGEFMRARTGFEHDVADIQTLMSHEKEKGLEDMDKELYLKMARFRHEIKLDSFKMLQDSALPLQVKKLKMEREKLRPAKPMPKVEDHGVSQ