Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10005051 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10005051 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9598
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (89.66%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9598

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (89.66%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F004856	Metagenome / Metatranscriptome	421	Y
F007645	Metagenome / Metatranscriptome	347	Y
F008134	Metagenome / Metatranscriptome	338	Y
F009922	Metagenome	311	Y
F010878	Metagenome / Metatranscriptome	298	Y
F020608	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000505112	F009922	AGGAG	MENTFDINTFDKDRTSSPASFKQCQAIGYKFAKKGSAMNWKLQKQITGCLYSLAKDERLNFKKAHQLLQGKSLPKVYLNKIDHYLKEKVS
Ga0222717_1000505113	F020608	GGAG	MKTKCKNPNGKSNMQVILDAKSNSPKFNSLEKAERYINELGYIFKVRNSVKEDRSVIYRHKFTKKGHVFLKSSYDFLSSGSMEMGTVWTIEQF
Ga0222717_1000505118	F007645	AGGAG	MSKIVYGKRDTKTVVSIEHAPQSIQTLWNQANSLGVNIVRVRANKERYETTTGDTFEGYHSGKVSVYNQKSKPSRPLHFVRRTPLGKDNKGMQILEVASNIDVQDTLEVINDYEYYTTNSFFARLVMSFRRLFA
Ga0222717_1000505121	F010878	AGGAG	MKIKAWNIGIVWEDGTEEAIGDVPDWVANSVDKYLNELEEEDDE
Ga0222717_1000505122	F004856	AGGAGG	MSDWLDGTKPKIISARYSAYLTWDLDELGIDWDNIKDWDLQRADLHVYFKDGTEKVYENWQDLEIDYKHNFKEVLILDEDWNKVEGLNG
Ga0222717_100050516	F008134	AGG	MPQLGSNEKPVLMSSKKNKGRVYGPSWHGGKGAAPRVNIHSKQYADNWDAIFGKKGGKDANKEENDN
Ga0222717_100050518	F001521	AGAAG	MTRLWITEHVNEEGSAIGPYIKADTIAQANRIAIQYGLLVLGEIQELQHDTQLEKRIVH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10005051

Overview

Ecosystem & Geography

Associated Families

Sequences