Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10004836 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10004836 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9841
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9841

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008190	Metagenome / Metatranscriptome	337	Y
F013783	Metagenome / Metatranscriptome	268	Y
F018962	Metagenome / Metatranscriptome	232	Y
F046982	Metagenome / Metatranscriptome	150	N
F056630	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000483610	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYESNENDKNQYSYVKRFFFDLCDDLGLEVGSKFDKTVLDINTQWGTHYEPSAKDIEFKIKKLKSELKELEEWKKNI
Ga0222717_1000483611	F008190	AGGA	MEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQTYVETLSDKPITYKIYHSPDITVNGTAELFDDIIEFE
Ga0222717_1000483612	F046982	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRMIKFYDNMRFLKQHFFDMNFRHMFENRARKMILKAEDFKTVKV
Ga0222717_100048364	F013783	AGTAG	LILEGISFKLALDFFIFLKKNKITSTNIKVDFFDRVKHEYIDFADVTAMEKYFQKNYIPLDNCNLGDLVSISFFLAASDLYDFSTEFKAIDVTNNLKLETGSAYDRQRNSGRKVFIDRQIQLIKNAVTDYVKYYSELKYIYVTGIYSPCYAVPGWSENTWYLKSFREAFTSVKDTSQFPYNDIKIEEYPPN
Ga0222717_100048368	F056630	N/A	MQKDNIDEASPEVKHWQWIKGDDIGLVVTIKNEDDKWINFENGGRLAKGLKSEYIQALNEDIAGEFVQPTSAGKDPLNVSAPQKTPTDVSIPALNTTPNPIRVLFNKQKKNNKVKLILEFPVNIPQKAVYELMSSSFDKNEVNDVLESFILDQLSEDEILDCLHGSVQSLIESKYKGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10004836

Overview

Ecosystem & Geography

Associated Families

Sequences