Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10004239 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10004239 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10618
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10618

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F041804	Metagenome / Metatranscriptome	159	Y
F042621	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000423910	F041804	N/A	LVVEALTFKLSLDFFVYLKKYKIAVSKIRIGFFDVAENKSTYTDFSSIDEMELFYQSNYVPFDPCFVGDLASIQVFIGESSLYDFTTEYRAENITKVFKLTPGSSFDIQRNKQREILINRQVGFINRAVEDYRKFWNEINRIYTTGIYSICYAQPGWSEGTWYLDQLRLAFTEKDDVAEFPYDDVNIIPEPPE
Ga0222717_100042394	F004606	GAG	MKAHRIFTKGQIVYCLLSSFSRPNVLLPVKGLIVDTQWDPINPLYQIRIIKMYDNMKYLKSHFFDMNFKYEFNNRARKMPIKKEDFKNVKSLEDRFDESDRDRLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNVRFKKGWVDKFQKGDIDIDKYLNSLG
Ga0222717_100042395	F008190	N/A	METNIEFNFIYSKDAVKVKSFLGNVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTVFDRNAVSIFYVLGNLNEPTVTGIKTYVESLTNNEITYNIYHSPDINVNGSAKLFENVIEFE
Ga0222717_100042398	F042621	N/A	MENTEEVNLQWIKGDKFGSVETVESTEGEWTIFKNGGRIATNLLSEFLEPIDGEPLDFNPPTPALIQAAEVYKEKVPPQKAITSPIRTLFDKQKKNDKVKLNLSFPIDVPKKAIYEIISSSFDSEEVNDELEVFIKNQISEDLILNSLFDSIKELIKTRYGID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10004239

Overview

Ecosystem & Geography

Associated Families

Sequences