Scaffold Ga0222717_10003931

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10003931
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11042
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012887	Metagenome / Metatranscriptome	276	N
F018004	Metagenome / Metatranscriptome	237	N
F050986	Metagenome / Metatranscriptome	144	N
F054001	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000393110	F054001	GGAGG	MIPDWILSLQSSATWARRYENRANFEWDEDVAEELQIIAERLETLLSEQEERYDECMANA
Ga0222717_1000393111	F050986	AGGAG	MGNQTTENLVGDLEDWIFEISRLVKSGHQLSPEALVFLQNIHPALDKLSEEMLENEQAWSEMKQAEAEENNAYLQGAAASVREVL
Ga0222717_1000393117	F018004	AGG	MGEVSILDRNAEEVRAVLRKLLDACEAGEITGAIIITEYQTGFDLDMPGTFSTDPDAIASIIGRLQMASNVFSQMSWEDEHDE
Ga0222717_100039315	F012887	AGG	MEVWETIVQSWPVAAGVFLLILTIGKILNRLEVLEAKMIEVWKAINELIRK