Scaffold Ga0222717_10003792

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10003792
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11273
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003225	Metagenome / Metatranscriptome	499	Y
F030067	Metagenome / Metatranscriptome	186	N
F030293	Metagenome / Metatranscriptome	186	N
F103165	Metagenome	101	N
F105072	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000379220	F003225	GAG	MTPELETYFDNYNELFNHEGFKQLLQELSNNAQQLADIQTVKDVEELFYRKGQVAALATVINLQGTIEAAREQAEVEEEGPVDV
Ga0222717_100037923	F030067	GGA	MPRESWEIAHDSYYDDLEADHYDGLDDSEAWKEEEQKVIDELIQRMQRAYGGVH
Ga0222717_100037924	F030293	AGGAG	MIVEMLDDRTSIEALGLLPHFFERSLYIEGQSIQSVADKMDDLYHYGGFVYPFEGTVDDKGTYISSSDEDDPLEPLARIDKLGFTLWVYPYAIVGLTDNKGNQKVARFD
Ga0222717_100037925	F103165	AGGA	MKTFYMCQITGKYFEDTLIAKTAVRVSDYPSEPSWGIYKTYDGAAILCDCDVDHAKGELNDDS
Ga0222717_100037929	F105072	AGGAGG	MENITRSKILGRSVIIRKRKILSKPFSYNQGECYHNLTGGLWSLYIEHKKGRPVNVSIDD