NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10003474

Scaffold Ga0222717_10003474


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10003474 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11825
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020895Metagenome / Metatranscriptome221N
F024442Metagenome / Metatranscriptome206Y
F030416Metagenome / Metatranscriptome185N
F038472Metagenome / Metatranscriptome166N
F056522Metagenome / Metatranscriptome137N
F097361Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000347410F020895GGAVFCLMMIVHGTIMPSIKAYEIVLEIDGQESCITLDDTFPAIDSWASACSMAVLMAKHIHPDKEVEFVSCAEYEADEYADIGYVYDAPVVLQ
Ga0222717_1000347413F097361AGTAGGMLYLLFTPFAGYFAMLITIVIMHSVGYDVRGVDTFTIWCIYIQIYVYLFVITKLKGKTDE
Ga0222717_1000347415F038472AGGAMRCEMQNFIKMTKKKPFNYGQKSTRDEWKRARKIARQAKLNLRKSVA
Ga0222717_1000347421F030416AGGMSRRDSTSIRYLLPKTQASIEQHMLSAAMAQFIELSQAHEENRPTLDTLIANTLTPKELKQHEPTLIYDSGWKDVS
Ga0222717_1000347422F024442AGGAMANSTAKSQTEGTSIDALVKEGKALGSIWRQVNSLKQTIKENGFDTRLGKLLQQLKANATTDAGQIPTHVLRTHGIQQIDRRRRAEALWFVENEKECREFIAKAKYKGSSLTALQAAMRKAAKGSEEDQTAKAEPSNVGQSDEAPAKAEKAPVKITHKVMVNTILAQTELNGLDLEKIIEDLMAAIPAAKAAA
Ga0222717_100034749F056522AGGAGMAANIKLTKTMLDKSIIDANKTVQGFLLEDFGMDYTDKFFTAQFYNAEKDRFERNKFTIIGEYIDGTEADITFYRSGKRGDKRISIQKLKQYADAGNEVRLISDSESDGDGTRIFISVYSTGSEADAA
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