Scaffold Ga0222717_10003082

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10003082
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12674
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027807	Metagenome / Metatranscriptome	193	Y
F034404	Metagenome	175	N
F040054	Metagenome	162	N
F048234	Metagenome	148	N
F066271	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000308211	F048234	GGAG	MQIAIQISKQVDDWDKWVDELEQIDSTASADDYDAEAKVVTLLVDPKSIDDHYHPVGGRYPVEFEGRKEFVEEIGICVHSCKWQDHNIINAEEVCAKLEGLDYVN
Ga0222717_1000308212	F027807	GGAGG	MSIKFVEPKPIKAELIQELDSLVGQLHNLSIRKPMPFHVQEAAMEARMADFLELSEQDFIRGWTDCEEGIEHREGKSEAYNAGYADCYEYENKGGQ
Ga0222717_1000308221	F040054	AGG	MITLPILSMPLPDGGSVVCRVEAIIGATSNMRNEDLTDVYVEVMCPEGITIDVDIDSFTQSWLAALITPMSEMREDHGMH
Ga0222717_1000308223	F066271	GAGG	MCVQSQRQFFAERHHIVVTDKTAELLARLGRDKGIGEEEYLKRLLRHPNEDHFIAEIARHYG
Ga0222717_1000308226	F034404	GGGGG	MLQTVTIDWHPVEQGSMPRNEGNYLVAFDDGAVETYPMSDQDIKRGEVRDGQTHGLLWAAGIPSPIDDGED