NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10003074

Scaffold Ga0222717_10003074


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10003074 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12685
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045049Metagenome / Metatranscriptome153N
F071292Metagenome / Metatranscriptome122N
F085783Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000307410F071292N/AMDVYIVIAFNQKDFYPVGVCDSLVLAKQYAQREYKERAKSHRVYVYKKTMNAPQMLEDKIVFKL
Ga0222717_100030745F045049N/AMAFVFIYVYLLVNQKQFSMRKFKEYWDKFTTRFAVPLLIVSMVWNTYLGWESRTNARMVEYRFKSYILEHRHLPIEENIYTITSVDGEKIEIDESTYGEVDTQWLRENGWEDMIPNPTDTFTPEGVTDIYLGKIFNGFKNMKNKIQNWYEDLFKEEYIKTIRG
Ga0222717_100030747F085783N/AMIKWLKTNIRLRKDLKKKQEEIDNLRTDWFKKQKEISDLKRELNLARKMWDISDKTKNY
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