Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10002991 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10002991 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12871
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (58.82%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12871

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (58.82%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y
F083376	Metagenome / Metatranscriptome	113	N
F085538	Metagenome / Metatranscriptome	111	N
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000299110	F037175	N/A	MINFHTNDINKGFVKSTVWNTLAHLKVYNIGKWLQKWDIHIWDLKDTNPQFFEHINTTSGQKINPDMPSGVTGKFRIDLYLHDSRNIFKLRENSDRIQHEICHALLIGTPHFVSGVHDNINNRFTVNYWYWDRFKYTKFTLSIIDIRQYL
Ga0222717_1000299111	F049294	AGCAG	MAGNLRYYGLGAYTGLVALWTGMGQIPLDQNTAIALLAPVAILIGADYAKHKNDNSE
Ga0222717_1000299112	F090244	N/A	MDVEARIFEKLDKIEDRINDLCVRITSMENEYNSHIADMEKKQANKLRHRDYILAIMAIGLTVIEVCRTLGVI
Ga0222717_1000299116	F083376	GAGG	MIRIYTDKQTDNLVESVDLGRVSLGETTKYTMYMKNTDTQWSVHNIKVENANPELRFEIPDTLKPNEVQEVFVYWTPKLDSREPLLTKFEFSGDVFIG
Ga0222717_100029919	F085538	N/A	LTSDNIFKVGVGINYFDDTKGLIKILTNDTVYDYITKFYVIDGIYAGRKDKQESDPNYLKDLQQIYSKIHIVDMNNKTQIEKRNKYWELAKKDKMDYMIVCDSDEYIDINPNVFDSSLRTIQDRPEKCYPIKQHMVGITTMSRPRLFKKPFTFKHLQSEDTISHGSLYEKDDTEIIAQMYAWFKDHPKREINSDNQSGVDGIEMWHDKEFRTKERIIADRVYYDTTPNR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10002991

Overview

Ecosystem & Geography

Associated Families

Sequences