NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10002681

Scaffold Ga0222717_10002681


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10002681 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13619
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032087Metagenome / Metatranscriptome181Y
F058510Metagenome / Metatranscriptome135N
F058511Metagenome / Metatranscriptome135N
F076587Metagenome / Metatranscriptome118N
F083373Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000268112F058511N/AMTRYALKTTHEGKAFYLAAYYEKLPANNGIYLTLIAEDACSYVTIDKACQVARMLEDSMGCVPSIVEVSY
Ga0222717_1000268114F032087GGCGGMKFLQYEIARATTADLLRAANFLEGAREIRRGCRKQRTKARKDQQTGWRKHVDSSILW
Ga0222717_1000268117F083373N/AMSTHPFDTSTFASVKLKNVPSYLQNEAAAYNLRAAAWFDNYAVNASQIDAAMADQDKLWKMRSAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPDGQHESEWTGPLPEYTLL
Ga0222717_1000268120F076587GGAGMAHAQLISYSYNRGSDLLHVQAIVDDAVQVLPATHLDPPEFDSAHCEAVILWDEPLDHTNAPTREQVQRMLPWITDWCAIPPITFDDD
Ga0222717_1000268124F058510N/AMLSQETELNFKVGRYADSLPVEVCVTFAAADSNKRPFIEGTIINPSTQIYDRLNNAATSMRCYCNSDMPLEQQQETIASIEPGTTVRVLAQQPSTKYDNKAFGTLISSFNIFKPESKKLKLLKTGPAQKQTFTVSNMPADLVERMDAKLDDIDVKRTYFLKKLINKFLAGDFDEDFV
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Institute for Fundamental Biomedical Research
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