Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10002624 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10002624 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13766
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (52.63%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13766

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (52.63%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027831	Metagenome	193	Y
F032237	Metagenome / Metatranscriptome	180	Y
F053965	Metagenome / Metatranscriptome	140	N
F057364	Metagenome / Metatranscriptome	136	Y
F077161	Metagenome / Metatranscriptome	117	N
F090238	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000262412	F027831	N/A	MPRGKQSGIAFGQRTKQKGQSDLDQLIRLKQFLKERFHMDFKREWYVGFDKEYGNLCRISESVGRKELERFKWKNPDLICHDKEYGIIIVELDGAIHDRKVRKTEERNDLFRGAGIKLVVLNIADIKECGQTIIERLESEMLNLIGQR
Ga0222717_1000262414	F057364	N/A	MLWTRGIMVKVEREDFEKSFVTTLIFTDGNEGQEIQVYAWEADAIEASLKTLPLEAVLGFYNKSGKTTIKEW
Ga0222717_100026243	F032237	N/A	MSEERNFIDKTTSLKTVERVKFSLKNFSKGSKIEISWAFNPEDSMHIDQFLETDPDKNNILIALNGFKSMCENTLGVKILTDDE
Ga0222717_100026245	F090238	GGAG	MRIHLEEGDEAHAEFHTHDGTTEVWLGGHLTIWGLFDTLIHESLHEAIENHADQVTTEKQDHWVIQRLCF
Ga0222717_100026246	F077161	GGA	MRNLTLPEIQARFDRHAKLHRFEVDKLFEKVKHKPFTEIQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYCGILRDIVTEEIEHVQDSITKSDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTNQQDLIPGYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVRMTYEGLKRAELFNNIGRAKA
Ga0222717_100026247	F053965	GGAGG	MGKLADAIKAYKIAPINSPAEREAKEIIIQITESQWWKDNVGREFKMPKKYDNKKQQAIFTEPQFLFFGNFIIPRFEFCEKCRLYKGLLTYNSGQMLYAKPHIT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10002624

Overview

Ecosystem & Geography

Associated Families

Sequences