Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10002463 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10002463 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14307
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (90.62%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14307

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (90.62%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003880	Metagenome	464	Y
F011052	Metagenome	296	Y
F011191	Metagenome	294	Y
F011663	Metagenome / Metatranscriptome	288	Y
F036425	Metagenome	170	Y
F070654	Metagenome	123	N
F104029	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000246313	F036425	GGAG	MAFDQMNIKDMLCDMYDIQRQVKQAKLLDAPKDNDGTIFTIKDCFDNVIGQLEQELERRGQEI
Ga0222717_1000246314	F011052	AGGAG	MDVDNYYKQLEGFRIKSYLGESEEGFPQFHLTKPRYKDVKVEVSADGEGNYGGVLFLSEMENV
Ga0222717_1000246318	F011191	AGGAG	MMTYFIDAKNEFIIDVDVRGYAHKKELIECDYLELYPHQVNGNDIWTDEEGNLKDYNYFFQIDDVIVSGNAVIMSCDEHGESVPPKNLTLEELKSRVTFMGKRYIDPSKLKFEVKEWK
Ga0222717_1000246322	F070654	GGA	MVRYIVMSTRTWKDIRIDEINESGATYSPNNEYFEEVYAIYDSKAETYEQFKKEFTNNG
Ga0222717_1000246326	F104029	AGGA	MTRLRLRYERKSTLLKKAHNYSMLMILSYFSAIAVTLFVGVLIDIITDNTDLMIDVCTLTFLGFGLLGIICMALSFIYTEKAFERN
Ga0222717_1000246329	F011663	GGA	MFEAFVLVCMIGNSDVCHTLKDLEGPYKTKQECIVRTYEMAADLPDYMPMFQALKYKCFEDKDSDKMRI
Ga0222717_100024635	F003880	GGAGG	MTKKKTKEINKIINLTAKESRRILQILEDLRSINATTDDKCPIDYEQICKLDRMEHKLANIVGAEVECEHGHYSRWSGSYEYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10002463

Overview

Ecosystem & Geography

Associated Families

Sequences