Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10002217 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10002217 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15228
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (90.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15228

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (90.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F008114	Metagenome	339	Y
F008731	Metagenome / Metatranscriptome	329	Y
F008816	Metagenome / Metatranscriptome	327	N
F033044	Metagenome / Metatranscriptome	178	N
F051861	Metagenome	143	N
F073418	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000221711	F051861	AGGAG	MIIEDQTVEVKVWDHNDAVIFVYESVYEKTGEVHESGHDVWRSYKQVVTAIPVDFTYDENLSDDDKLQKVRNAADALSQLYSHAGDYEMGVSYYINHDQYINPEDPDLPYVS
Ga0222717_100022172	F008731	AGGAG	MFVLFATKPLNDGTQGFRFNFAGLKGLTRKRKHASRGYKVTRNDCMNAVHLGKRTVYIERKPNRNTERKLCHFAG
Ga0222717_1000221722	F008816	GGAG	MLFYTVLVLSYTLNGDYLQSNIIFPSARACGDALPAYYEPVYAIDRDAIGQCLKTEVMSASIKPKRRPL
Ga0222717_1000221728	F033044	AGGA	MAKYTMDMVLEYAKIFPENADMGSPDGPRAAQAIHQKGGQYIVNAYFTDEDQIEKLVAEGLDLTPMNSQRVLQGNAEFGIGKYMKVKRMVSDVKTFSDKKTGEPVNVDYGGAPTVVDLTQGKENKRLWSFSEDGAIGNGTKAKVQFETYASGAGVRLMNVGITEHVAYETNSAPTEDDELFMVG
Ga0222717_100022173	F006728	AGG	MTKIDFNNIVVRHNGRTISIAQHWSRTSEGDFLNAQEIADVGELYHDDYDPIRFDDTVDGLINALQAIKKEIEQ
Ga0222717_100022174	F073418	AGAAGG	MTFDKQKLRQIREAMQEALENAGIYDVTIKVGNCSYSGGEATYKVQVLLDGAETQEQSSLSQMASLIGLDTSKIAKISGQAVTLIGYNSKARKMPWQVRSLTGHDQWKLTDDQAKRMFGKVDA
Ga0222717_100022176	F008114	AGGA	MKLTINTKAFPDADPGMLQEMLGVLPYWVGEYILLGRDMDIVGFMTERYGFGSLYEFKGSVSDDGTYSYPEDPDLPYVGKMNTPNGNVYFYQYAMLALPLPNGEYFITRMD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10002217

Overview

Ecosystem & Geography

Associated Families

Sequences