Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10002151 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10002151 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15466
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (96.97%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15466

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (96.97%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F003051	Metagenome / Metatranscriptome	510	Y
F022888	Metagenome / Metatranscriptome	212	N
F046689	Metagenome / Metatranscriptome	151	N
F069323	Metagenome / Metatranscriptome	124	Y
F071638	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100021511	F071638	AGGAG	MEKTKLKKFNSNEKALRYIRELGFNLKDRHCFKEDRSFLYTKKYSKQQVYLRSTFDYLNDNTIEMGTVWTVQQF
Ga0222717_1000215117	F003051	N/A	MNIKILKNKVTIELTTSEYDDMFKYINKLRSMLSTLHETNDLWLSDVHNLDSLQYDLVNLLDAKWDAGSYRYVKRGQGK
Ga0222717_1000215118	F069323	GAGG	MNEKQITIKIPARHLEWIKKNYSKSRSGVTSLFEYGGIDIQEVHAIADLLYHLNEAFEIEGGE
Ga0222717_100021512	F046689	AGGAG	MKEGHLINKINRLIPIAKATPMSEFYDDDSTGIWIRGSEYSYQGTLSYERLLYEHYLAYEAGCSEDDCVHPDLLKIIQDAGWFYEPYDAGTLMLYPNY
Ga0222717_1000215121	F022888	AGGAGG	MNYIYERMMAEGETAIFDRNELRKFENYVAKNYTEFYESKAGYEIEKQGEEFLVTLFKNPVITMEDILLDIRD
Ga0222717_100021514	F002593	GGAG	MSKTIYSRNGSATTESIDNASPTVRAIWNQAHRFGANIVRVRAEKNRFGTDTGRTFNSFHHGKVSVYKQKDQVHESNALYFARKIPLTKVNKGMQILEIASSLDVQDTLDTVDAIQYYSETSFFERLWNRIRYGTPMSITS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10002151

Overview

Ecosystem & Geography

Associated Families

Sequences