Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10002119 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10002119 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15578
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (92.50%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

15578

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (92.50%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006530	Metagenome	371	Y
F010277	Metagenome	306	Y
F019561	Metagenome	229	Y
F024420	Metagenome	206	N
F031295	Metagenome	183	N
F031695	Metagenome	182	Y
F050005	Metagenome	146	Y
F051867	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000211910	F050005	AGGAGG	MYNKTNYPLYHEFKLMKFGNVLMNTNVDDILDQEIEETTIIINKLKDINQFVEA
Ga0222717_1000211911	F024420	GGAGG	MTIYEELRKIIERNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHSIKLYDAMTFKEILTLCRDYNVGGRFK
Ga0222717_1000211912	F010277	GGAGG	MSRLKDKLLEVELFVGEKLQDLTNEQVIKEVRKHYGSQMFVDHAEELLHEFQQEVNLERLQSW
Ga0222717_1000211913	F031295	AGG	MVRAEEKLFNVISALTDEYNNYPHKRLKKSEVQNLVHDLEVVDAEFHDLKLPPITDDIQLDNKVCLFYIINELKDIITEPNVEDVEKRLTDFHNTLVFNLGVNALHNHKNDWEDR
Ga0222717_1000211915	F019561	GGAGG	MTDKFSKPILRNLRTSLQDILKAECFGDKIPFEYTLGNCSFDEDQAKFQLIVTFKGNSVEDIAKKKQKEDLEHYAKYFDLDLERKHPRYTLVGYKIKSRKLPWIITDNQKSGEYIISDDQAKKLFGKQDVDTFLKGQREAQANG
Ga0222717_1000211920	F031695	AGGAGG	MINFCEEWICDGCGNIFDKTELVDSIQLPYYACQDCEAVLKKDMEEVND
Ga0222717_1000211927	F051867	N/A	MFKALLLVCSLVHGSGDKKSCFELHDMEAPNGYNTIEECMGRIDEMVDMTRVMVPFPHQVKYKCEKIFERI
Ga0222717_1000211930	F006530	AGGAG	MRLISTLIKRFEDEAIEFASAGMEEEAQDARRLASKYTEMKYNGHTHSLRSEINEKWKKKTTNGNEKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10002119

Overview

Ecosystem & Geography

Associated Families

Sequences