NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10002119

Scaffold Ga0222717_10002119


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10002119 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15578
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (92.50%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006530Metagenome371Y
F010277Metagenome306Y
F019561Metagenome229Y
F024420Metagenome206N
F031295Metagenome183N
F031695Metagenome182Y
F050005Metagenome146Y
F051867Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000211910F050005AGGAGGMYNKTNYPLYHEFKLMKFGNVLMNTNVDDILDQEIEETTIIINKLKDINQFVEA
Ga0222717_1000211911F024420GGAGGMTIYEELRKIIERNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHSIKLYDAMTFKEILTLCRDYNVGGRFK
Ga0222717_1000211912F010277GGAGGMSRLKDKLLEVELFVGEKLQDLTNEQVIKEVRKHYGSQMFVDHAEELLHEFQQEVNLERLQSW
Ga0222717_1000211913F031295AGGMVRAEEKLFNVISALTDEYNNYPHKRLKKSEVQNLVHDLEVVDAEFHDLKLPPITDDIQLDNKVCLFYIINELKDIITEPNVEDVEKRLTDFHNTLVFNLGVNALHNHKNDWEDR
Ga0222717_1000211915F019561GGAGGMTDKFSKPILRNLRTSLQDILKAECFGDKIPFEYTLGNCSFDEDQAKFQLIVTFKGNSVEDIAKKKQKEDLEHYAKYFDLDLERKHPRYTLVGYKIKSRKLPWIITDNQKSGEYIISDDQAKKLFGKQDVDTFLKGQREAQANG
Ga0222717_1000211920F031695AGGAGGMINFCEEWICDGCGNIFDKTELVDSIQLPYYACQDCEAVLKKDMEEVND
Ga0222717_1000211927F051867N/AMFKALLLVCSLVHGSGDKKSCFELHDMEAPNGYNTIEECMGRIDEMVDMTRVMVPFPHQVKYKCEKIFERI
Ga0222717_1000211930F006530AGGAGMRLISTLIKRFEDEAIEFASAGMEEEAQDARRLASKYTEMKYNGHTHSLRSEINEKWKKKTTNGNEKK

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