Scaffold Ga0222717_10001710

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001710
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17641
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (22.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020259	Metagenome	225	N
F024582	Metagenome / Metatranscriptome	205	Y
F026537	Metagenome / Metatranscriptome	197	N
F036969	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100017101	F026537	N/A	MKQEIVNRLEYVEETYAGELETWHDPVADTYYHVPISIDRNWDESEALLSHKPNTMTHERKEQHIKQLAFSINNGASAYSTDNFTIEDLPTPQRTGTITQQDTYSKHKARQIFE
Ga0222717_1000171012	F036969	N/A	MNTMFSTHAVRLAYGRTLMDGGSSLITSDGYDFEVPYRGFMVGGLSGETKIPLDICDSNTFHTIWLKYATEVRKLLKESKLSGVSYAVGTWIDKECIVFDVSEKVTHSRSAYALCKERNEDAYYDVEANKSVFIEKDNDNAEA
Ga0222717_100017105	F020259	N/A	MINLKMTERTFTAVADWAERIQMMTQDNDLINAQDILHDVFGMLRDDEHFLPRL
Ga0222717_100017107	F024582	N/A	MKCTHNTLTHLLGAWDRLEVIGTNPDNYKSILTNTLLPHRNEFGKRQVKIAIEYRIEEGGARCAPYIYAFLVMYDQNGRRRSVIKNGSWGCHGEDMMEFKLWFAKKLRDANDLQEQRIENAQDSITDFLS