Scaffold Ga0222717_10001536

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001536
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18755
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (90.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000913	Metagenome / Metatranscriptome	838	Y
F017163	Metagenome / Metatranscriptome	242	Y
F058448	Metagenome / Metatranscriptome	135	Y
F100035	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000153615	F100035	AGGAG	LIYYFTALVITYSMDAERITTSYILYDKKRHCQEALQGLADPIYNQIYELYEGTMMQCVVSDKVSYVLKPKLRPENG
Ga0222717_100015362	F017163	AGGGGG	METITLELPDFWATALFYDDTSGFEYEDEKPFQEFCDWAVKNYGTSEPVDMDEEPQFMRYHDAERFGVLACNVHSYTFIVNNGNPTTSAMTTLAHTIK
Ga0222717_100015363	F000913	AGGAG	MKHWEVEHNDQHLRIEWNESATFNLQTPVGGQWVDYHCFTCYGIDSEQEALEHAMEVLEGVE
Ga0222717_100015368	F058448	GGAG	MKIPKEMQYEEDFSWVTFKDNSRKGLALSKDVGGLTFVATWVRTDSFEADEEEA