Scaffold Ga0222717_10001474

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001474
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19209
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005208	Metagenome	408	Y
F005656	Metagenome	394	Y
F006091	Metagenome	382	Y
F014969	Metagenome	258	N
F022777	Metagenome	213	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000147411	F014969	AGGA	MISNYPFGKDTKSPDYYYTQNVYSDRGKGITGKMKKRKNKNVRIRKIKKIT
Ga0222717_1000147415	F022777	N/A	MSTKPETLFYKQIFRELKQVFWSRIENRHGGGIPDLYGVYNGFSFWLECKTIIKQNRINISPLQISWNYKNFSNNPNNFYIVQAPRRKIIKLYDGDKGRELLKNGFDYPCSLEFEPRSYHLLLDFLTAKK
Ga0222717_100014742	F006091	AGGGGG	VDNDFELPDYYNTSKPKEEKQDLVKRKCFACNKEKAMGKFERYCSDSCRSRATKNYQAPNSIRW
Ga0222717_100014743	F005208	AGGAG	MTLEELYWWRVERLWTMYNSITNDEVYKSMWERKLKELLLRGFRGQ
Ga0222717_100014746	F003531	AGG	MKRKKWTENETELARQLLKKHSYATVGKMLHRSKNSVIGQFYREKVMNGYTPDPFSKYTRKKERAIL
Ga0222717_100014749	F005656	AGGA	MKLKDLLEIQKIVEDRAIPYDVLEFDTVHFSKSKGYNVKILDLHLTHAIRILNNYLDDDQYSRKYSDRQDINDSLRGIRDRVEDISEVVNK