Scaffold Ga0222717_10001251

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001251
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20992
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (65.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024584	Metagenome	205	N
F039351	Metagenome	164	N
F060351	Metagenome	133	N
F063088	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000125114	F039351	AGCAG	MSRIMVTGDSWSAGEWDPTLTPEETRAFAEKYSISRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEIGFDFVIYVKTCATRDFKHLTPEHHRAYTTTDLFEKIKLVKELEYKVLDQYKHKLILLGGIEKIEPDFNCYLKIPSITEFFYPDFEDTTIFGDYTHFEKYSDNDKRGAMKLWELWEHKHNFWKEHPEYFASATDQVHPNRKATKALAEFIHEQLR
Ga0222717_1000125116	F060351	N/A	MTTKYDDMVWKILCGMPIEVFDEDDDTVWENETWELVKTRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTKSDDITALSHDIFNNILDKFTEDKLIRKRPENIRKTFQLIN
Ga0222717_1000125117	F024584	GAGG	MYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYEILKDKLFESTRSLNIEAAYADRCIHWNQREIDQIKPVNNMRNPWLRFKREFEQCLDGRTPSKNVETALAWFYASPYRDDWIAS
Ga0222717_1000125125	F063088	N/A	MYLTEKDLKFEIRQVNATINELATDQAGDIRYLHQEVVELKEQIQMLTEQVEFLKDKINE