Scaffold Ga0222717_10001149

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001149
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21976
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008946	Metagenome / Metatranscriptome	325	Y
F027182	Metagenome / Metatranscriptome	195	N
F042875	Metagenome	157	N
F085541	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000114911	F027182	N/A	MANILQQIGTTVKSKLDDKVDKSDAVTDFLKSILGFPEDTVSPEVDTAANITARTSDDQGTIMYGSDTYDLYVFDGSNWQVYNNS
Ga0222717_1000114912	F085541	N/A	MSVWYLMGQSVRNLLISLTSTSKAILDTESNIQARTGDDLGTMAYATDTNKLYVFTDSGWQAAQ
Ga0222717_1000114914	F008946	N/A	MARPARRPVVRPNPLSFQQRTISAVSSAVATENKEKADNLQSKVTSLESDPFFVTIDGGSPVLDETDIFDGGQADA
Ga0222717_100011494	F042875	AGTAG	MNNNDQTDSFMFDLDNLIRRYQQEFDLNDQTIVGSLEFAKLTVLTDAEILFSAEDMDDEDDLISPNF