Scaffold Ga0222717_10001069

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001069
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22895
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F036977	Metagenome / Metatranscriptome	169	Y
F046073	Metagenome / Metatranscriptome	152	Y
F052263	Metagenome / Metatranscriptome	143	N
F056157	Metagenome / Metatranscriptome	138	N
F098233	Metagenome / Metatranscriptome	104	N
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000106911	F046073	AGG	MVLFEFTKVKSVLGELGTTNDAKIKHYGEMADNALMGDLINVKDLPNPLAVTEDVLTQTELDDIKSFASQYTVGYFYKFESGDEMTIAEAKENWKNWFMSKFRRPSFKARGGEI
Ga0222717_1000106912	F098233	AGGA	MRKTTLKPVYEIIFELSKLFDSECAICLKKMKKPKSGFTIHHLVYRKGEKNHKDFISRLEYYKYLKPIVIKYNKKGNMYSKFMFLCNACHHSLDGPRGLNRRKKENVLRLFLAYYSTNT
Ga0222717_1000106918	F052263	GAG	MTKSSFWAKYRMRENRNNQFRPEQIELYKQLRATNANSELLMEYPVTYTNEQDEKRTAIGDIVDVTKKIFYRLNGAVHNSNKQEEKDWEQKIYLEQLGWKVVDVET
Ga0222717_1000106927	F036977	GGTGG	MSFDLTKQRLQSAKNRINNHIDQNIVLWATETVLLPGQTDIANSISQRAADGLSLEKSGYMKVDLVWDFRSEEGAPIHFFLEYGTRPHEIRAKGKENGGADALHWTGPSGESRYAKVVQHPGTQARELISQIKEERTADLKQRIIDETQRFMEINSI
Ga0222717_1000106929	F106115	AGCAG	MAVATAATIQAHLIGGTYPEGTLDANNIFDYAQYTTRRRYPSCEVITTQPESTIETKKSTDTTIAFEINYYDKNLGLRTDDVSTQREVENVIRARMETMVLQDYKVVLESKTWSRQSVQRDGSHPAYLVSTLKITVRQVNVTVMPVDGVLKFVKVGSTVDNAPGADYTYTNVFDVDLQSGYRDIEEGHTGSNIPKHFAGHIQGRFICNIMVKNADLGTTGDKLNKMPLLRSNGEKSEIKFEYTDKTADEVTITNTFTAEPESVQMMYKTSDAVVFRLIARLITDIIVT
Ga0222717_1000106930	F056157	N/A	MVKKKLGQDDFWAQQIIRAQSGGKDYIFALVRRKYSEDDIEPTGPGQYIGLTEKKSYPKMTDNDPDSTTFGKRIDKPNAEPIGLKMKYEDEFTPENVKKYQSMFGINDFGETIFIYKFKQISIRADKVNEFWTISQDDAYNKYILKEQVIKIEESKSNTRRRVSKKTG
Ga0222717_1000106931	F006550	N/A	MAKVFNTKKADYKGMQLWLNPVDKTVYATEGAPTHSFAEAGGYAIYDFNKHFTNQKLAKDNFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVIGLADGSLTAKAAAGAWDTFTANTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRIGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAALIQSETGRQLTGCTTPTNWT