Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10000892 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10000892 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25043
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (28.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25043

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (28.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002321	Metagenome / Metatranscriptome	571	Y
F043937	Metagenome / Metatranscriptome	155	Y
F051863	Metagenome / Metatranscriptome	143	N
F071122	Metagenome / Metatranscriptome	122	N
F099888	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100008921	F071122	AGG	MVYSDKVKASRVMLDIIKSMNDEETIKFTYGKGWKGEPNVYRVHCYKDKEGKSSYSIWNSFSGMNVDSLGPTTVKCYTYDMMSQRTNYSFPLYEM
Ga0222717_1000089217	F099888	N/A	MRKKYIIPKTNVGQGGFFYISGKRYHGPSWTVVEEDTTFDDLEFEPQPFSELFKEKEEEQWKFTSARSGEEYIVRYNIRNELSCSCWGYIAHRKCKHIKEVQKLVA
Ga0222717_1000089227	F051863	N/A	MTKIEIINEIIVKKQEELKKLKATGKKLEDTRIDAMFSVIEKYLGGEFTLDDVYISKPSYGYSGGTYEVKRPNKDYKYDKEIMTIRFHEDWKTNELDGIETSIYSTSDNSQWELERIFTNGEVAKVLLDHGDDLLAEMNVVRLTNSKEISDARTDIYKVETSITQLEGEINDIHIKEAEEKLNGEGLVFGKEKKGDMDIKWDWTLRGINSAKIISKTASGKSCNIEIQAYDYEPRVFEKVRMSNVDALLWQYRDYVINA
Ga0222717_1000089239	F002321	N/A	MELDFIKIKVMELDLNKEMAWVTFLDDGWETKWHPVLDDSGKQLEWGLHGEGIMELCRSRFNVKGNWISFGIAQTSQMIVKNSVRDNL
Ga0222717_100008924	F043937	AGAAG	MKFTEYKEWNTKPLTTGLWRPYEVEVGFIEDYIKRTSIETNDIILF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10000892

Overview

Ecosystem & Geography

Associated Families

Sequences