Scaffold Ga0222717_10000648

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000648
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29683
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (25.53%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005430	Metagenome / Metatranscriptome	401	Y
F007969	Metagenome	341	N
F009493	Metagenome	317	N
F030253	Metagenome	186	Y
F030897	Metagenome / Metatranscriptome	184	N
F046025	Metagenome / Metatranscriptome	152	N
F046651	Metagenome / Metatranscriptome	151	N
F051114	Metagenome	144	Y
F058949	Metagenome	134	N
F095404	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000064813	F030253	N/A	MLKKYFRKQLHKRYVSKYLAETRWEIINTVIVASATEYSYEMQKHLKNLGGLVRKYERRSRWLKF
Ga0222717_1000064816	F095404	N/A	MFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0222717_100006482	F051114	N/A	MRNKAIDKVLKHNAQLFQNLGIDSSKAEVQAAKIQERKNLRSVRHYDPELIDRLINDGDK
Ga0222717_1000064820	F030897	N/A	MQVEAGILHLEHSGIEVEVTVVWDLVQGGPIYALKGETVFMSLTAEELKALYVLYRDLELKGKIEDA
Ga0222717_1000064822	F005430	N/A	MKLTRKYEFVDEAEANASIDLLRNEEGNLTQSVVKLGYLTIEPPVIDEEGNTIKEAVVSTKYAVDVSWSITPLQSWEEFIVWPTPMGIHNYGSSSQRDEYAKTYCQLYPESNYCNPPEPEDQEQP
Ga0222717_1000064830	F046651	N/A	MKITLTKKVTSPSGKKLAKGLTLTVVNEYGQELIEAGKAVEFGEEAPAEAPQVIEDEQINLN
Ga0222717_1000064835	F046025	N/A	MKVIFNQAIAGADFYYRKGQVEVLPTAVAQDYLNAGFCSVVEEKKAAKAERAVSKKTTKRTTRKAK
Ga0222717_100006484	F058949	N/A	MFNNNSYEYKKAIRAKATKAFGPTIKLDLFLEFIGFWDAREYKNANEIRTEAKDMHLNKVVSFMNQYTDG
Ga0222717_1000064845	F007969	GGA	MKVEEAKKLTFFLMDKKIVAFPQVSNGGACVNILVEGECYTLKKNENFYGKVCIERK
Ga0222717_100006489	F009493	N/A	MKTRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALKEVKEQLGFNQDAPFNSFRVTANVRYRYDLDNSIIAVKFTSDALKTLGWIKDDSPKYFRHLLLVWKESIPANTAQIIITLSDEHPE