Scaffold Ga0222717_10000564

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000564
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31750
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (66.07%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F057353	Metagenome	136	N
F058118	Metagenome	135	N
F093726	Metagenome	106	N
F099330	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000056418	F099330	GAGG	MSKLGDVEEGKVMLGEIREKLNAFINKINPDDNSLPLDGLHWFISIEADCEDLVEHLSDYNSYDPG
Ga0222717_1000056427	F093726	GGAG	MTYEIAEYKYATHMKTVYGLTGDIEYPSRKHSQQDSEGNWLLISFNGHKMGKVMKDGKVI
Ga0222717_1000056428	F004343	AGGAG	MTQHKEMIDEARMLLSTKKENIPSMTHDMKKDYWLLTYPCGKIVKTYEDKRKNDVVVQESYT
Ga0222717_1000056429	F057353	GGAG	MSVTRYNFRKPKINRQEHESINKIFTHPHFNALINPKALDVLTELGISAKQFQDIINKNKSILTSYKNKEL
Ga0222717_1000056437	F058118	AGGA	MAIKLYNLEVLVDDLVYVGSEIRAKSQEEAIKILGIISGGEVTENSEVLSCEEKTLH