Scaffold Ga0222717_10000418

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000418
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36909
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (90.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F004952	Metagenome	417	Y
F005590	Metagenome / Metatranscriptome	395	N
F005843	Metagenome / Metatranscriptome	388	Y
F009460	Metagenome / Metatranscriptome	317	N
F010322	Metagenome / Metatranscriptome	305	N
F020173	Metagenome	225	N
F025969	Metagenome / Metatranscriptome	199	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000041815	F000256	GAGG	MADGVSGIGSAPFNVQSDIHQQTQTRERIEAHLVEQRVTKEHRANHTHLESLREQKLDLGKGYDKFGTKTNADRPQGTNINIEV
Ga0222717_1000041821	F004952	GGAG	MNLTHTHEFLITHITDSGTGFAVRTDNGESVHISPRLLQQAHANLDDICKGIIVQNAVEEQRERTPWVAAYVQERRAARDVLGLATDAPAEAVQAPTEEPKPIDWADVQRRIIAMLQSADVTYCETADISDVVGVEPRKLSQHLENMHARGEICRAHVNQRANQQRATLVLWSINADVYK
Ga0222717_1000041822	F020173	GGA	MICTTCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEEEE
Ga0222717_1000041825	F005843	N/A	MMALALRLNMKVGLKMTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPKPRPTQESENG
Ga0222717_1000041826	F009460	AGGAG	MAKWDLTKLENSASVGAYIDEDSSTPTQPTPLMLVMSIRRKADILRMDAGRGPERLTIKQRAEEIMALCEMLEKRL
Ga0222717_1000041829	F005590	GGAGG	MTESLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHGELSVGDLCSMIEQDAVHIDIGLKTMRERRTIIKTSFIEGQQLYRLRTQEEFAF
Ga0222717_1000041831	F010322	GGA	MVWTCSVDDDFTLTPEQHAEMSAVASNTMSEANTLMRDMMAITERTELPDLAKVYALGAALQSVIGFMRENDCDVQDAIAMTMGIIFETYSTPDKEDMH
Ga0222717_1000041846	F025969	AGAAG	MWTALLLLCSVEGKCFAFGSPVMQSESQCIQSIPSGLKYARQMFPAYRATDYQCVQWGEG