Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10000348 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10000348 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40015
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (26.23%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

40015

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (26.23%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013533	Metagenome / Metatranscriptome	270	Y
F016009	Metagenome / Metatranscriptome	250	Y
F024656	Metagenome / Metatranscriptome	205	Y
F036588	Metagenome / Metatranscriptome	169	Y
F078790	Metagenome / Metatranscriptome	116	N
F087229	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000034813	F036588	GGTGG	MLSPMYWVKRKIQQIKRVIDFLPLIWNGFDFDYRYAIDIFKKQLERIATDMETNGRLECSDVNAQKIRTAIRLMDKVYEEEYSTEYMSTIDKLYGTTHYDFEELEEMDKNGDPYYRLVHWNEGAVDDKHQKEIDGVRHEMMLLSQDKQKRAHKLLWDYIEHNIQRWWD
Ga0222717_1000034817	F078790	N/A	MSKVIGTKYGIEITKPWNQKMYDWNELVGKLIKIDLYNKLEEFYKKGDKSGMNKIANSFGPSYGEGYDVDAVFDGVFDDITQLQNYQINEELEWLVKDGLIKEPEFGFVGYDK
Ga0222717_1000034818	F016009	N/A	MRITDNWTKEMRRYRIIEHTLRGESVYVVEWNDRWFLGLWGNWHEKFHSTSIEEAIKKIHRLVHLKLNRK
Ga0222717_1000034827	F087229	AGTAG	MNNIYNYITDDDLVKDPLITKEILERLTPRQNKMLDEGRLLFNPVNGDMIVPMMTQNGIAKIIVNIF
Ga0222717_1000034832	F024656	N/A	MSKQTKDWMEKLVENYRIPTEEETQKKAEPKKMLNDSQLKKILSKD
Ga0222717_100003485	F013533	N/A	MFNAEDIKTVEGFRRNFGEPKEGMLLDLTQEFIEAYHRHGVDSFELVDGFGLDWVQLLMNYNEDVEEYELCAIFRDLINDYIKTKIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10000348

Overview

Ecosystem & Geography

Associated Families

Sequences