NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000103

Scaffold Ga0222717_10000103


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000103 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66490
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (36.51%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F003777Metagenome / Metatranscriptome469Y
F011405Metagenome / Metatranscriptome291Y
F055744Metagenome / Metatranscriptome138Y
F066827Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000010326F011405N/AMKVLIKPKVTKPWSKEMYDYNDKVADMMKKEIINSIKINKNNWNELNELMSLCGGIRYGEGFSIEDLYEDCLSEVENVQNYWLNDEYPYCVSKGLVNDIGYKFVGYGK
Ga0222717_1000010347F055744N/AMVNYGNGFTWKEVYTMPIHWRGFYFKKLVEAKKKEKEEYDKVSKKGGSRGPNVRVRK
Ga0222717_1000010361F003777GGAGMSSKPKPNVVTPFDDKQRFKNLVLEVFEDMESFSHIPDSISLDGVLFTLTLSNKKFVYEEIKVDNSSDYIDVYLQGIKKTSDIYSVTDNGTDIVINFTESITLSPEDIVNTDFSVKGKIVSR
Ga0222717_1000010362F002188N/AMAIKDLVRILKQVHEPDEYRLSAHDMNHSLYWIWKLNDGKLKDLDLELRSFRPEHARFDIFINGQYVLENDYIFEHSGSKLLIKFKKANFDYNLEESDDIKIEGDIQVG
Ga0222717_100001038F066827N/AMAGIKFIHTDDKEVVIKGTPNVPINKSKKLNSIDGSESLFYIETETAFKMKLDSKVDFSKKHPQDDNFSLITIPINRI
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Institute for Fundamental Biomedical Research
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