Scaffold Ga0222717_10000102

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000102
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66806
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (20.34%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007974	Metagenome / Metatranscriptome	341	Y
F043289	Metagenome / Metatranscriptome	156	Y
F044789	Metagenome / Metatranscriptome	154	Y
F057993	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000010225	F007974	N/A	MSKRAKAGVDLRSPNPTKTKRMGRSRGPLVFNEHVGHKVTQKIDEAITNNREK
Ga0222717_1000010230	F043289	N/A	MKITIEQHKEKFTYESEFDSMDMSELTDKLYALCLTAGYHPDSVGECFFEKGREMTEHLYPDDNVEEDVVSSGVSDPIQGEQTISILSRYNEERKFTIIAKNCVEYSFKDDGHTGCSRNDDGSLESVDPSGGPYIGIGTNLGEYIHKDLGDLTVTKIKVDEHKAGTYYLTVK
Ga0222717_1000010232	F057993	N/A	MRYNDVEFRPATENRHAEIVALNYSEELDKETAYTLCWIKGDSEGYYMRTIGNRYVEYDDMIALNHVAKYALRSLNVQFEFEERL
Ga0222717_1000010234	F044789	N/A	MNANIRAILGLDEPPMREVTRNRKGVMSYSSKDAGCIQLFTNDSWERNKKYYVPNGPRSCVKNFMRG