Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10000089 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10000089 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	71751
Total Scaffold Genes	144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (34.72%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

71751

Total Scaffold Genes

144 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (34.72%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F023615	Metagenome / Metatranscriptome	209	Y
F025718	Metagenome	200	Y
F048843	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_10000089115	F025718	AGG	MIKTNNKVNGFIAKVNIIDRKTGELISSNVMMKCEHHATIEDLNKDLAKFGLPRKFELVEWIA
Ga0222717_1000008941	F023615	N/A	MNRFELEDAMSDVRQVGEDIETMIYAIGDSPIKHTEDQLLNMLIGIKQLHETRYQKMWNVFEQLVKKGIISNKEGGME
Ga0222717_1000008942	F016956	AGGGGG	MIELEKPWQAPKEVASAIIDLALTHIKKVEANPEVETEGDNFDYWYSYDLGDGNYIDYNIHCGDEWCVVKQDGSGEYEYTDPSTWSWDVACYAVDPPTKEFQYHSIDTGREHYLFNYNKQGNKEIVFES
Ga0222717_1000008943	F007770	N/A	MSGEGLSVSFRRTSFTDKSNAELLEEFQKIIYNSRVMRHMKWYGKAHTLDILEHGDDNRQKWEQEYVAIKDTFQFEISVYESWYEDADLYESHEVEDSFVSLARKFANDNALMYFPNGFPAEWIEQEIIDGEKNWNHYNVKPDDKNIDKICDVWYRYGIMKLQAFDEKVESQLWAEARDKIKELIENKYEYAK
Ga0222717_1000008957	F048843	GGA	VIEVTNKAKKEKYFVFSVPTAYIYEIQAETEKEAREILVEHGGIEIYGDQCEMTSEDYENAELEQTYEM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10000089

Overview

Ecosystem & Geography

Associated Families

Sequences