NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000083

Scaffold Ga0222717_10000083


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000083 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72939
Total Scaffold Genes137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (20.44%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F007723Metagenome / Metatranscriptome346Y
F016004Metagenome / Metatranscriptome250Y
F020607Metagenome / Metatranscriptome223Y
F023218Metagenome / Metatranscriptome211Y
F031507Metagenome / Metatranscriptome182Y
F042385Metagenome / Metatranscriptome158Y
F099335Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000008311F099335AGGAGGMNEQLFKVKIVQIIAILLFSLCTIPLFGQTSKVITQIDDNLYQYRAYNEDGSIHQKGKYIGTKDGKLLVHSYWSDDVGTKALYNKGKLVWIKPKGQPRYTYKEIEYEQMKARIRDLENKLAIRP
Ga0222717_10000083134F006200N/AMSKNKEDWLEELVKKYSIPTDDKTEKRGILSETQMKNLKDGKN
Ga0222717_10000083135F016004N/AMNKRLLEILETLREDFEMLRDGSWDLTYSDGTEIESSLDNIEEAIEIVTNEQK
Ga0222717_1000008319F020607N/AMNIEQLVNEYPNDMELGKKVRELYLKGIKYREELSEKMKDAKIFESPDGGKTVYVRGWGHPISERKLVENTNQLNLFNDVN
Ga0222717_1000008347F007723N/AMIKAIKSKMLTYLFKDWVMNEKDLDSLKITKNFIRKREIEIIGHVPVVGFRSYSKK
Ga0222717_1000008349F031507N/AMIKVNDKIKFENKYGQIQEGIVTDNNYQCEFDADLNGCVRVSVDYGSSIIGTVNTLIDKSQILKNVKL
Ga0222717_1000008362F023218AGGMRFPINKRPIEYINGNPYLICAIIPIENCKNVSLIKEWLGADTAFKVQREGKYWFCETIQEINYEPI
Ga0222717_1000008370F042385N/AMRKLIYKITEEKTQSQSIYHIEFITDRTPEWTEEQYLRNRSNTIMELVSNEETKEQESLSREVKLG
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