Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10000048 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10000048 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	92240
Total Scaffold Genes	160 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	115 (71.88%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

92240

Total Scaffold Genes

160 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

115 (71.88%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F016126	Metagenome	249	Y
F037128	Metagenome	168	Y
F054680	Metagenome / Metatranscriptome	139	Y
F054818	Metagenome / Metatranscriptome	139	N
F072868	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_10000048102	F005315	N/A	MYIVTCGDSFTKGEGLENSSQAYPYQLQKLLKSDKLTNLSQSGASEYLITAQVEEAVKLKPDLIVVGHTSEYRWQVWDVRNNITQGFIVANHVIKNEKYYRNWILSEQILANRRSEDKKHQAAWHAAGMLYYSDEELVRRLWSGAVAKQILLCQRANIPMIHHCCFPHLHPLLEELTDDYVKFHLDLEKHDDFAPDNSHAGAISHMKLATLLMSKHLPTL
Ga0222717_10000048107	F072868	AGG	MYFKLVSKNAYRDLVRNARRISISQLSDSEKSEAFQELFTLLEKRLDESTRSLNVEAAYAQRCQHWNQRDIAQLQPVKDCRNPWLQFKREFVLALRSQSVCRGVGVALAWFYQQPHRDDWVAS
Ga0222717_10000048157	F016126	N/A	VDTIYFNWYELLSKARKDQTAILILAFAQTKLYNARTTKGLMGALKINHIPIHLFTTGLLEQKKEKLVCNYQTEEPMSYFKNPWFLTQNVSILQKTEYLQLLSMRRISENQDYIAKNYIRKDINNPFVNIKGDKIYFTQESSVSRKSYT
Ga0222717_100000485	F054818	AGGAG	MTLNYDITIIRNCTTSTQLFSVVETFAYQVSELEDRLKRAEYAYDWDAIESALGQLAVKRYTYKFAYDAASEMEEDEHECMMSAEINDAMMGDRV
Ga0222717_1000004862	F054680	AGGAG	MKKEPMKMQRKTDGLTPAQKKLPPALQAAILKKMKSK
Ga0222717_1000004895	F037128	N/A	MISQKMIRRIKKPLKDFLDNQSLTDAEKSFILGCINAQTKYPQLTHRQWQIICEIEKRYKDGKDSRIKTDS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10000048

Overview

Ecosystem & Geography

Associated Families

Sequences